Publications PDF Print E-mail

Submitted Articles:
  • L. Padilla, M. Budinich, M. P. Cortés, D. Maturana, G. Levicán, R. Bobadilla, A. Maass, P. Parada, Comparative analysis of iron oxidation of Leptospirillum ferrooxidans and Acidithiobacillus ferrooxidans using metabolic models. Submitted 2011.
  • G. Espinoza, M. Latorre, E. Pécou, M. González, A. Maass, A mathematical model for metal stress response in Haloarchaeal NRC-1. Submitted 2011.
  • R. Bobadilla-Fazzini, M. P. Cortés, L. Padilla, D. Maturana, M. Budinich, A. Maass, P. Parada, Stoichiometric Modeling of Oxidation of Reduced Inorganic Sulfur Compounds (RISCs) in Acidithiobacillus thiooxidans. Submitted 2011.

  • P. Martínez, S. Gálvez, N. Ohtsuka, M. Budinich, M. Paz Cortés, C. Serpell, K. Nakahigashi, A. Hirayama, M. Tomita, T. Soga, S. Martínez, A. Maass, P. Parada, Metabolomic study of Chilean biomining bacteria Acidithiobacillus ferrooxidans Wenelen and Acidithiobacillus thiooxidans Licanantay. Submitted 2011.

2012

  • A. Hart, S. Martinez, F. Olmos. A Gibbs approach to Chargaff's second parity rule. J. Stat. Phys. 148, 408-422 (2012).




2011


    

  • The Potato Genome Sequencing Consortium* (A. di Genova among authors), Genome sequence and analysis of the tuber crop potato. Nature 475, 189–195 (14 July 2011).
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  • C. Hodar, P. Moreno, A. di Genova, M. Latorre, A. Reyes-Jara, A. Maass, M. González, V. Cambiazo, Genome wide identification of A. ferrooxidans (ATCC 23270) transcription factors and comparative analysis of ArsR and MerR metal regulators. Biometals 2011 (August 10).
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  • M. Latorre, F. Olivares, A. Reyes-Jara, G. López, M. González, cutC is induced late during copper exposure and can modify intracellular copper content in Enterococcus faecalis. Biochem Biophys Res Commun. 2011, 406(4):633-7. 
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  • J.M. Guberman et al. (A. di Genova among authors), BioMart Central Portal: An Open Database Network for the Biological Community. Accepted DATABASE journal 2011.
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  • A. di Genova, A. Aravena, Luis Zapata, A. Maass, M. González, P. Iturra, SalmonDB: A bioinformatics resource for Salmo salar and Oncorhynchus mykiss. Accepted DATABASE journal 2011.
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  • A. Hart, S. Martinez. Statistical testing of Chargaff's second parity rule in bacterial genome sequences. 
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 Stochastic Models, 27, 2, 272-317, (2011). 






2010


    

  • W. Davidson, B. Koop, S. Jones, P. Iturra, R. Vidal, A. Maass, I. Jonassen, S. Lien, S. Omholt, Sequencing the genome of the Atlantic salmon (Salmo salar). Genome Biology (2010) 11: 403.
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  • C. Hodar, R. Assar, M. Colombres, A. Aravena, L. Pavez, M. González, S. Martínez, N. C. Inestrosa, A. Maass, Genome-wide identification of new Wnt/β-catenin target genes in the human genome using CART method. BMC Genomics (2010) 11:348.
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  • J. Briche, Y. Lacroix, A. Maass, Adaptation d’un algorithme génétique pour la reconstruction de réseaux de régulation génétique: COGARE. Revue d’Intelligence Artificielle 24 (2010) 7-26.
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  • A. Reyes-Jara, M. Latorre, G. López, A. Bourgogne, B.E. Murray, V. Cambiazo, M. González, Genome-wide transcriptome analysis of the adaptive response of Enterococcus faecalis to copper exposure. BioMetals. 2010. 23(6):1105-12.
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  • T. Del Pozo, V. Cambiazo, M. González, Gene expression profiling analysis of copper homeostasis in Arabidopsis thaliana. Biochem Biophys Res Commun. 2010. 393(2):248-52.
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2009










    

  • M. Arrázola, L. Varela-Nallar, M. Colombres, R. Assar, A. Aravena, A. Maass, S. Martínez, N. C. Inestrosa, Calcium /calmodulin-dependent protein kinase type IV (CaMKIV) is a target gene of the Wnt/β-catenin signaling pathway. Journal of Cellular Physiology 221 (2009) 658-667.
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  • N. Ehrenfeld, A. Aravena, A. Reyes-Jara, N. Barreto, R. Assar, A. Maass, P. Parada, Design and use of oligonucleotide microarrays for identification of Biomining microorganisms. Advanced Materials Research 71-73 (2009) 155-158.
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2008






    

  • G. Levicán, J. A. Ugalde, N. Ehrenfeld, A. Maass, P. Parada, Comparative genomic analysis of carbon and nitrogen assimilation mechanisms in three indigenous bioleaching bacteria: predictions and validations. BMC-Genomics 9 (2008) 581.
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  • R. Uauy, A. Maass, M. Araya, Estimating risk from copper excess in human populations. The American Journal of Clinical Nutrition 88 (2008) 867S-871S.
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  • M. González, A. Reyes-Jara, M. Suazo, WJ. Jo, C. Vulpe, Expression of copper-related genes in response to copper load.  The American Journal of Clinical Nutrition 2008. 88:830S-834S. 
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2007






    

  • G. Didier, C. Guziolowski-Vargas, Mapping sequences by parts, Algorithms Mol. Biol., 2, 1, 11, 2007
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  • P. Moreno, A. Maass, B. Andrews, J. Asenjo, Gene regulation of metabolic pathways: a continuous model for Escherichia coli carbon sources uptake, 8th International Conference on Systems Biology 2007, Long Beach, California. (poster)
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  • N. Ehrenfeld, G. Levican, S. Galvez, R. Assar, I. Pacheco I., A. Aravena, A. Maass, P. Parada, Estudio genómico y transcriptómico de una cepa nativa de Acidithiobacillus ferrooxidans crecida en presencia de distintos sustratos minerales. In XXIX Congreso Chileno de Microbiología, 2007.
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2006








    

  • E. Pécou, A. Maass, D. Remenik, J. Briche, M González, A mathematical model for copper homeostasis in Enterococcus hirae , Mathematical Biosciences 203, 2, 222-239, 2006.
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  • Hart, S. Martínez, L. Videla, A simple maximization model inspired by algorithms for the organization of genetic candidates in bacterial DNA, Advances in Applied Probability 38, 4, 1071-1097, 2006. Presented as invited lecture at International Workshop on Applied Probability, Connecticut, May 2006.
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  • V. Acuña, G. Didier, A. Maass, Coding with variable block maps, Theoretical Computer Science 369, 1-3, 396-405, 2006.
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  • M. González, A. Reyes, M. Suazo, T. del Pozo, C. Hodar, E. Pécou, A. Maass, Cellular metabolism of copper in pro- and eukaryotes: comparative analysis of their transcriptional regulation mechanisms, Placenta 27, 1, 29-29, 2006. (poster).
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  • A. Reyes, A. Leiva, V. Cambiazo, MA. Mendez, M. González, Cop-like operon: structure and organization in species of the Lactobacillale order. Biol Res. 2006. 39:87-93.
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2005




    

  • A. Maass, E. Pécou, Sa. Martínez, Mathematical and computational methods in biology, Collection Travaux en Cours 65, Hermann Editeurs, Paris, 2005, 300 p.
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2004








    

  • A. Moreira, A. Maass, TIP: Protein Backtranslation Aided by Genetic Algorithms, Bioinformatics 20, 13, 2148-2149, 2004.
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  • AD. Armendariz, M. González, L. Loguinov, CD. Vulpe. Gene expression profiling in chronic copper overload reveals up regulation of Prnp and APP. Physiol Genomics. 2004. 20:45-54.
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